alb@cgl.ucsf.edu
(415) 476-5641, 476-4893 (voice)
(415) 476-0688 (fax)

Box 0446, UCSF; San Francisco, CA 94143-0446

University of Rhode Island, Kingston, RI, B.S. 1959, Chemistry
MIT, Cambridge, MA, Ph.D., 1962, Chemistry, Physics

R.J. Chalkley & A.L. Burlingame, "Identification of Novel Sites of O-N-Acetylglucosamine Modification of Serum Response Factor Using Quadrupole Time-of-flight Mass Spectrometry," 2003, Mol. Cell. Proteomics 2, 182-190.

K. C. Hansen, G. Schmitt-Ulms, R. J. Chalkley, J. Hirsch, M. A. Baldwin and A. L. Burlingame, "Mass Spectrometric Analysis of Protein Mixtures at Low Levels Using Cleavable 13C-Isotope-coded Affinity Tag and Multidimensional Chromatography," 2003, Mol. Cell. Proteomics 2, 299-314.

Y. Oda, C. Sihlbom, R. J. Chalkley, L. Huang, C. Rachez, C.-P. B. Chang,, A. L. Burlingame, L. P. Freedman and D. D. Bikle, "Two Distinct Coactivators, DRIP/Mediator and SRC/p160, Are Differentially Involved in VDR Transactivation During Keratinocyte Differentiation," 2003, Mol. Endocrinol. 17, 2329-2339.

E. Perlson, S. Hanz, K. F. Medzihradszky, A. L. Burlingame and M. Fainzilber, "From Snails to Sciatic Nerve: Retrograde Injury Signaling from Axon to Soma in Lesioned Neurons," 2004, J. Neurobiol. 58, 287-294.

P. R. Cutillas, R. J. Chalkley, K. C. Hansen, R. Cramer, A. G. W. Norden, M. D. Waterfield, A. L. Burlingame and R. J. Unwin, "The Urinary Proteome in the Fanconi Syndrome Implies Specificity in the Reabsorption of Proteins by Renal Proximal Tubule Cells," 2004, Am. J. Renal Physiol., 287, F353-364

E. Perlson, K. F. Medzihradszky, Z. Darula, D. W. Munno, N. I. Syed, A. L. Burlingame and M. Fainzilber, "Differential Proteomics Reveals Multiple Components in Retrogradely Transported Axoplasm After Nerve Injury," 2004, Mol. Cell. Proteomics 3, 510-520.

K.F. Medzihradszky, X. Zhang, R.J. Chalkley, S. Guan, M.A. McFarland, M.J. Chalmers, A.G. Marshall, R.L. Diaz, C.D. Allis and A.L. Burlingame, "Characterization of Tetrahymena Histone H2B Variants and Posttranslational Populations by electron Capture Dissociation (ECD) Fourier Transform Ion cyclotron Mass Spectrometry (FT-ICR MS)," 2004, Mol. Cell. Proteomics, 3, 872-886.

M Vergés, F. Luton, C. Gruber, F. Tiemann, L.G. Reinders, L. Huang, A.L. Burlingame, C.R. Haft and K.E. Mostov, "The Mammalian Retromer Regulates Transcytosis of the Polymeric Immunoglobulin Receptor," 2004, Nature Cell Biol. 6, 763-769.

F. Chu, S. Shan, D. T. Moustakas, F. Alber, P. R. Egua, R. M. Stroud, P. Walter and A. L. Burlingame, "Unraveling the Interface of Signal Recognition Particle and Its Receptor Using Chemical Cross-linking and Tandem Mass Spectrometry," 2004, Proc. Natl. Acad. Sci. 101, 16454-16459.

Cutillas PR, Biber J, Marks J, Jacob R, Stieger B, Cramer R, Waterfield M, Burlingame AL, Unwin RJ. Proteomic analysis of plasma membrane vesicles isolated from the rat renal cortex. Proteomics. 2005 5(1):101-112.

D. M. Smith-Beckerman, K. W. Fung, K. E. Williams, N. Auersperg, A. K. Godwin and A. L. Burlingame, "Proteome Changes in Ovarian Epithelial Cells Derived from Women with BRCA-1 Mutations and Family Histories of Cancer," 2005, Mol. Cell. Proteomics, 4, 156-168.

J. C. Trinidad, A. Thalhammer, C. G. Specht, R. Schoepfer and A. L. Burlingame, "Phosphorylation State of Postsynaptic Density Protein," 2005, J. Neurochem., 92, 1306-1316.

M. Trester-Zedlitz, A. Burlingame, B. Kobilka & M. von Zastrow, "Mass Spectrometric Analysis of Agonist Effects on Posttranslational Modifications of the Beta-2 Adrenoceptor in Mammalian Cells," 2005, Biochemistry, 44, 6133-6143.

Y. Fukata, A. V. Tzingounis, J. C. Trinidad, M. Fukata, A. L. Burlingame, R. A. Nicoll and D. S. Bredt, "Molecular constituents of neuronal AMPA receptors," 2005, J. Cell Biol., 169, 399-404.

J. Wysocka, T. Swigut, T. A. Milne, Y. Dou, X. Zhang, A. L. Burlingame, R. G. Roeder, A. H. Brivanlou and C. D. Allis, "WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development," 2005, Cell, 121, 859-872.

A.L. Burlingame, X. Zhang and R. Chalkley, "Mass Spectrometric Analysis of Histone Posttranslational Modifications," 2005, Methods, 36, 383-394.

M. Tanaka, R. Bateman, D. Rauh, E. Vaisberg, S. Ramachandran, C. Zhang, K. C. Hansen, A. L. Burlingame, K. M. Shokat and C. L. Adams, "An Unbiased Cell Morphology Based Screen for New Biologically Active Small Molecules," 2005, Pub. Lib. Sci. Biol., 3(5): e128

P. Casati, X. Zhang, A. L. Burlingame and V. Walbot, Analysis of leaf proteome after UV irradiation in maize lines differing in sensitivity, 2005, Mol Cell Proteomics, 4, 1673 - 1685.

Bonnie K. Baxter, Hagai Abeliovich, Xin Zhang, Aline G. Stirling, Alma L. Burlingame, and David S. Goldfarb, ATG19p Ubiquitination and the cytoplasm to vacuole trafficking pathway in S. cerevisiae, 2005, J Biol Chem. 280, 39067-39076.

Olsen O. Moore KA. Fukata M. Kazuta T. Trinidad JC. Kauer FW. Streuli M. Misawa H. Burlingame AL. Nicoll RA. Bredt DS "Neurotransmitter Release Regulated by a MALS / Liprin-α Presynaptic Complex." 2005, J. of Cell Biology 170(7) 1127-1134.

F. Chu, D.A. Nusinow, R.J. Chalkley, K. Plath, B. Panning and A.L. Burlingame, "Mapping posttranslational modifications of the histone variant macroH2A1 using tandem mass spectrometry," 2006, Mol Cellular Proteomics, 5, 194-203.

Jonathan C. Trinidad, Christian G. Specht, Agnes Thalhammer, Ralf Schoepfer, and Alma L. Burlingame, Comprehensive identification of phosphorylation sites in postsynaptic density preparations, 2006, Mol. Cell Proteomics, 5, 914-922.

K. Vosseller, J.C. Trinidad, R.J. Chalkley, C.G. Specht, A. Thalhammer, A. J. Lynn, J. H. Snedecor, S. Guan,K. Medzihardszky, D Maltby, R. Schoepfer and A L Burlingame, "O-GlcNAc proteomics of postsynaptic density preparations using lectin weak affinity chromatography and mass spectrometry," 2006, Mol Cell Proteomics, 5, 923-934.

Pablo Rodriguez-Viciana, Juan Oses-Prieto, Alma Burlingame, Mike Fried and Frank McCormick, "A phosphatase holoenzyme comprised of Shoc2/Sur8 and the catalytic subunit of protein phosphatase 1 functions as an M-Ras effector to modulate Raf activity," 2006, Mol Cell, 22, 217-230.

J. Recht, T. Tsubota, J.C. Tanny, R. L. Dias, J. M. Berger, X. Zhang, B. A. Garcia, J. Shabanowitz, A. L. Burlingame, D. F. Hunt, P. D. Kaufman and C. D. Allis, "Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S-phase in mitosis and meiosis, 2006, P. Nat. Acad. Sci., 103, 6988-6993.

F. Chu, J. C. Maynard, G. Chiosis, C. V. Nicchitta, and A. L. Burlingame, "Identification of novel quaternary domain interactions in the Hsp90 chaperone, GRP94," 2006, Protein Science, 15, 1260-1269.

Qin Zhou, Monique Cadrin, Harald Herrmann, Che-Hong Chen, Robert J. Chalkley, Alma Burlingame and M. Bishr Omary, "Keratin 20 serine-13 phosphorylation is a stress and intestinal goblet cell marker," 2006 J. Biol Chem., 281: 16453 - 16461

Chu F, Mahrus S, Craik CS, Burlingame AL. Isotope-Coded and Affinity-Tagged Cross-Linking (ICATXL): An Efficient Strategy to Probe Protein Interaction Surfaces, 2006, J Am Chem Soc. 128(32):10362-3.

RJ Chalkley, C.S. Brinkworth and A. L. Burlingame, Side-Chain Fragmentation of Alkylated Cysteine Residues in Electron Capture Dissociation Mass Spectrometry, 2006, J Am Soc Mass Spectrom., 17, 1271-1274.

2/8/07