Appendices for Genome Analysis

The following Taqman QPCR assays are available through the Genome Analysis Core. Primers and probes are not guaranteed to be in stock, so please contact the Genome Core in advance to check on the availability.

Ph: 415-502-1861 E-mail: genome1@cc.ucsf.edu

We have custom designed assays (labeled IDT) and assays from Applied Biosystems.  Custom assays designed in the Core (purchased from Integrated DNA Technologies-IDT) are restocked as needed and available at no extra charge. We also have limited quantities of some assays from Applied Biosystems (labeled with the ABI assay ID) available at no extra charge. Once they are depleted, they will not be restocked, and users will be responsible for purchasing.

This list is also available in a printable PDF document.

Human Core Assays

Name Assay ID
GOS2-5 Hs00274783_s1
PTPRT Hs00179247_m1
STK6 Hs00269212_m1
MAN2A2 Hs00196172_m1
Ceruloplasmin Hs00236810_m1
HOXC6 Hs00171690_m1
RAD21 Hs00366726_m1
MMP7 Hs00159163_m1
E2H2 Hs00544830_m1
CLGN Hs00189073_m1
CYP4B1 Hs00167970_m1
MEOX2 Hs00232248_m1
STAT1 Hs00234829_m1
TGM2 Hs00190278_m1
FK506 BP Hs00296750_s1
JUNB Hs00357891_s1
WARS Hs00188259_m1
CD44 Hs00174139_m1
Keratin 5 Hs00361185_m1
RAGE Hs00179504_m1
G3PD Hs00193386_m1
IRX5 Hs00373920_g1
TKT Hs00169074_m1
XBP1 Hs00231936_m1
SOD2 Hs00167309_m1
Gps2 genome Hs00377852_g1
RGS5 Hs00186212_m1
RARRES3 Hs00184937_m1
C-JUN Hs00277190_s1
CXCL1 Hs00605382_gH
GSTP1 Hs00168310_m1
MMP3 Hs00233962_m1
PTGS2 (COX2) Hs00153133_m1
CD48 Hs00152927_m1

 

Name Assay ID
BIRC3 Hs00154109_m1
CCL19 Hs00171149_m1
FRAS1 Hs00262645_m1
GAS1 Hs00266715_s1
AMACR Hs00204885_m1
UBE2C Hs00738962_m1
TPR Hs00162918_m1
SPRY1 Hs00398096_m1
PDYN Hs00225770_m1
Arginase Type II Hs00265750_m1
IL6 Hs00174131_m1
EGR1 Hs00152928_m1
NKX 3.1 Hs00171834_m1
FOLH1 Hs00379515_m1
Fibronectin IDT stock
ERS-1 IDT stock
DSG1 IDT stock
PSA IDT stock
ORF2 IDT stock
Moysoy IDT stock
TULP IDT stock
TULP4ex1 IDT stock
IGF1R IDT stock
AR IDT stock
CACNA1S IDT stock
HECA IDT stock
DEG IDT stock
CACNB2 IDT stock
Leptin IDT stock
ZTM IDT stock
UGT2B15 IDT stock
h.PSA IDT aliquot
HELA IDT aliquot
h.ERS1 IDT aliquot

Name Assay ID
DEG IDT aliquot
DEGs IDT aliquot
h.BAX IDT aliquot
h.IGFIRT IDT aliquot
PTTG1 IDT aliquot
CACNB2 IDT aliquot
h.P16 IDT aliquot
CACNAIS IDT aliquot
MoySoy IDT aliquot
ORF2 IDT aliquot
TULP IDT aliquot
TULP4 IDT aliquot
UGT2 IDT aliquot
ZTM IDT aliquot
DSG1 IDT aliquot
IGF1R IDT aliquot
GADD45 IDT aliquot
AR IDT aliquot
Leptin IDT aliquot
HPV16 E2 5’ IDT stock/aliquot
HPV16 E7 IDT stock/aliquot
HPV16 E2 3’ IDT stock/aliquot
KNSL6 Hs00199232_m1
RBBP9 Hs00180736_m1
HSPC056 Hs00204280_m1
MOX2 Hs00245978_m1
LOC51136 Hs00211612_m1
PLCL1 Hs00196518_m1
FLS20473 Hs00215208_m1
HPGD Hs00168359_m1
FLS10560 Hs00216703_m1
BCL6 Hs00153368_m1
CCND1 Hs00233498_m1

 

Name Assay ID
MTP Hs00165177_m1
GIATT/SLC6A4 Hs00169010_m1
AKT1 Hs00178289_m1
AFAP Hs00222181_m1
ATK1 Hs00920503_m1
PSIP1 Hs002252515_m1
PTEN IDT aliquot
Pif middle IDT aliquot
Pif 5’ IDT aliquot
HER2 ISIS/Erb2 IDT aliquot
EGFP IDT aliquot
SKP2 IDT aliquot
N-myc trans. IDT aliquot
MDM2 IDT aliquot
p27-Rip1 IDT aliquot
ESR1 IDT aliquot
Colon Pool IDT aliquot
EGFP IDT aliquot
MYCN IDT aliquot
p53 IDT aliquot
VEGF IDT aliquot
18S IDT stock
BAX IDT stock
BID IDT stock
CAR IDT stock
Caspase 3 IDT stock
c-Myc ex1 IDT stock/aliquot
CyclinG IDT stock
GADD45x2/3 IDT stock
HER2 ISIS/Erb2 IDT stock
HIF1a const. IDT stock
TR WT/mutant IDT stock
IGF2 IDT stock

Name Assay ID
MDM2 IDT stock/aliquot
NFAT2 IDT stock
P53x10/11 IDT stock
p53x4 IDT stock
PERP IDT stock
PIG3 IDT stock
14.3.3 sigma IDT stock
VEGF IDT stock
WISP1 IDT stock
WISP2 IDT stock
ZNF217 RNAi IDT stock
TFGB IDT stock/aliquot
ANG1 IDT stock
ANG2 IDT stock
ATM IDT stock
B-actin IDT stock
BCL2 IDT stock
CCND1 IDT stock
CYP1-a IDT stock
ECDIIIa IDT stock
EGFP IDT stock
EGFR genomic IDT stock
ERB-69 IDT stock
ERB alt IDT stock
FOXp3 IDT stock
BCLXL IDT stock
BimEL IDT stock/aliquot
HPV18-E6 IDT stock
HPV18-E7 IDT stock
TERT IDT stock
NABC1RB IDT stock
NABC3 IDT stock
MMP9 IDT stock
NCAM2 IDT stock

 

Name Assay ID
Pi3K IDT stock
PIC1L IDT stock
Proteoglycan-1 IDT stock
SXR IDT stock
TERT? IDT stock
Tarada IDT stock
ZABC1 cDNA ex2/3 IDT stock
ZABC1 genomic IDT stock
ZABC2RB IDT stock
E1A IDT stock
Aromatase ex2/3 IDT stock
BRACA1 IDT stock
CCK IDT stock
CKS1 IDT stock
CYP24 IDT stock/aliquot
DAX IDT stock
FKSG2 IDT stock
GH IDT stock
ICSBP1 IDT stock
MDS1/Evi1 IDT stock
Neo IDT stock
Noe3 IDT stock
Noe4 IDT stock
Noey2 IDT stock
P14Arf, spec. IDT stock
P27 endo IDT stock
P27 exo IDT stock
TK IDT stock
Prefoldin IDT stock/aliquot
PTEN IDT stock
PTTG1 IDT stock
SKP2/p45 IDT stock
TCF1RT3 IDT stock
VDR IDT stock


 

Name Assay ID
WFDC IDT stock
WOXT/WWOX IDT stock
CDNK1B IDT stock
TIEG2AA62 IDT stock
Dex-Ras IDT stock
H-Ras, spec. IDT stock
HSP90A IDT stock
Hypo.pro, mRNA IDT stock
K-Ras, spec. IDT stock
K-Ras4a&b IDT stock
NKG7 IDT stock
N-Ras, spec. IDT stock
RA5 IDT stock
Rap1 (a&b, rev. spec.) IDT stock
RasD1 IDT stock
RassfA ex1/2 IDT stock
RassfB ex1/2 IDT stock
RassfC ex1/2 IDT stock
R-Ras ex2/3 IDT stock
Ras3 ex5/6 IDT stock
TC21 ex1/2 IDT stock
Unk.pro. chr. 3 IDT stock
C-myc ex2/3 IDT stock/aliquot
AKT1 IDT stock
AU147799 IDT stock
AW162846 IDT stock
BAALC IDT stock
BMP7 IDT stock
Clone 23698 IDT stock
CSMD1 IDT stock
EIF4EBP1 IDT stock
IKB IDT stock
KRT18 IDT stock
NCK1 IDT stock

 


 

Name Assay ID
OSF2 IDT stock
PIK3CA IDT stock
PIK3CB IDT stock
PP1R14A IDT stock
PRG1 IDT stock
PTPH1/PTPN3 IDT stock
RIS1 IDT stock
SFRP1 IDT stock
SNAI3 IDT stock
SOC3 IDT stock
Valosin/VCP IDT stock

updated July 23, 2008

Additional Resources
A searchable database of core facilities at all UCSF campus locations, provided by the Clinical and Translational Science Institute at UCSF, is available here.