Genome Analysis Resources

• UCSC Genome Bioinformatics
• National Center for Biotechnology Information (NCBI)
• Real Time PCR Primer and Probe Databases
  • Real Time PCR Primer and Probe Databases RTPrimerDB
  • Real Time PCR Primer Sets
  • ABI Taqman Gene Expression Assay Search
  • Roche Universal Probe Library
  • Superarray Sybr Primers for Gene Expression
  • Primer3
• Gene Quantification
  Everything you ever wanted to know about quantitative PCR.
• geNorm
  geNorm is a collection of VBA macros for Microsoft Excel to determine the most stable reference (housekeeping) genes from a set of tested candidate reference genes in a given sample panel. From this, a gene expression normalization factor can be calculated for each sample based on the geometric mean of a user-defined number of reference genes.
• Normfinder
  NormFinder is an algorithm for identifying the optimal normalization gene among a set of candidates. It ranks the set of candidate normalization genes according to their expression stability in a given sample set and given experimental design.
• Applied Biosystems
• Sequenom
• Roche
• Agilent Technologies
• Nanodrop
• Superarray
• SABiosciences, A Qiagen Company

Additional Resources
A searchable database of core facilities at all UCSF campus locations, provided by the Clinical and Translational Science Institute at UCSF, is available here.