Bruce Faddegon, PhD

Bruce Faddegon, PhD

Professor in Residence, Department of Radiation Oncology, UCSF

Phone: (415) 353-7195 (voice)
Box 1708, UCSF
San Francisco, CA 94143-1708

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Cancer Center Membership

Associate Member » Breast Oncology» Prostate Cancer

Research Summary

Dr. Faddegon is a board certified clinical medical physics who is internationally recognized for his research in developing and using Monte Carlo methods for treatment head simulation and dose calculation with an eye to improving accuracy and precision in radiotherapy. The overall objective of Dr. Faddegon’s research is to allow for more aggressive treatment in sites where side effects, local control, and even metastases are a problem through cost-effective solutions to improve the therapeutic ratio.

Current research includes developing TOPAS, the Tool for Particle Simulation, a collaboration of UCSF, MGH and SLAC supported by NIH to improve advanced simulation of proton therapy, and developing XPERT, X-ray Plus Electron Radiotherapy, adding electrons to intensity-modulated radiotherapy with x-rays to reduce serious side-effects of radiation, especially in children. Dr. Faddegon is also working to establish image-guided radiotherapy with portal imaging for more precise targeting of tumors and avoidance of critical structures.

Dr. Faddegons clinical responsibility is physics support of linear accelerators (linacs). This includes management, installation, commissioning, maintenance and quality assurance. Highlights of Dr. Faddegon’s published clinical development work at UCSF include developing the means to treat the whole body over a short distance (3 meters), developing new x-ray targets to reduce downtime that are implemented on linacs worldwide, implementing high precision graticules for patient localization, and determining the means to detect and correct defective circuitry in treatments using virtual wedges.


University of Victoria, Victoria, Canada, B.Sc., 1977, Physics (honors)
University of British Columbia, Vancouver, Canada, M.Sc., 1983, Physics (radiobiology)
Carleton University, Ottawa, Canada, Ph.D., 1990, Physics (radiotherapy)

Professional Experience

  • 1977-80
    Geophysicist, Amoco Canada, Calgary, Alberta
  • 1982-84
    Sessional Lecturer and Laboratory Instructor, University of Victoria, Victoria, BC
  • 1984-86
    Medical Physics Resident, Ottawa Regional Cancer Center, Ottawa, Ontario
  • 1990-92
    Research Associate, Ionizing Radiation Standards, National Research Council of Canada, Ottawa, Ontario
  • 1992-93
    Medical Physicist, BC Cancer Agency, Vancouver, BC
  • 1994-98
    Medical Physicist, Toronto-Sunnybrook Regional Cancer Center, Toronto, Ontario
  • 1994-2000
    Assistant Member, School of Graduate Studies, University of Toronto, Toronto, Ontario
  • 1998-2000
    Senior Medical Physicist, Toronto-Sunnybrook Regional Cancer Center, Ontario
  • 2000-2010
    Associate Professor in Residence, Department of Radiation Oncology, University of California San Francisco
  • 2010-present
    Professor in Residence, Department of Radiation Oncology, University of California San Francisco

Honors & Awards

  • 1980
    National Science and Engineering Research Council of Canada (NSERC) scholarship for M.Sc. studies
  • 1982
    NSERC scholarship for Ph.D. studies - declined
  • 1986
    Ontario Cancer Foundation fellowship for Ph.D. studies
  • 1988
    Ontario Graduate Scholarship for Ph.D. studies
  • 1989
    American Association Physicists in Medicine (AAPM) Young Investigator's Award, Second Prize
  • 1991
    Farrington Daniels Award (AAPM)
  • 1992
    Runner-up to Sylvia Fedoruk Prize (Canadian Organization of Medical Physics)
  • 1996
    Runner-up to Sylvia Fedoruk Prize (Canadian Organization of Medical Physics)
  • 2007
    Appointed Fellow of the American Association of Physicists in Medicine

Selected Publications

  1. Faddegon BA, Shin J, Castenada CM, Ramos-Méndez J, Daftari IK. Experimental depth dose curves of a 67.5 MeV proton beam for benchmarking and validation of Monte Carlo simulation. Med Phys. 2015 Jul; 42(7):4199.
    View on PubMed
  2. Ramos-Méndez J, Perl J, Schümann J, Shin J, Paganetti H, Faddegon B. A framework for implementation of organ effect models in TOPAS with benchmarks extended to proton therapy. Phys Med Biol. 2015 Jul 7; 60(13):5037-52.
    View on PubMed
  3. Polster L, Schuemann J, Rinaldi I, Burigo L, McNamara AL, Stewart RD, Attili A, Carlson DJ, Sato T, Ramos Méndez J, Faddegon B, Perl J, Paganetti H. Extension of TOPAS for the simulation of proton radiation effects considering molecular and cellular endpoints. Phys Med Biol. 2015 Jul 7; 60(13):5053-70.
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  4. Méndez JR, Perl J, Schümann J, Shin J, Paganetti H, Faddegon B. Improved efficiency in Monte Carlo simulation for passive-scattering proton therapy. Phys Med Biol. 2015 Jul 7; 60(13):5019-35.
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  5. Shiao SL, Ruffell B, DeNardo DG, Faddegon BA, Park CC, Coussens LM. TH2-Polarized CD4+ T Cells and Macrophages Limit Efficacy of Radiotherapy. Cancer Immunol Res. 2015 May; 3(5):518-25.
    View on PubMed
  6. Testa M, Schümann J, Lu HM, Shin J, Faddegon B, Perl J, Paganetti H. Experimental validation of the TOPAS Monte Carlo system for passive scattering proton therapy. Med Phys. 2013 Dec; 40(12):121719.
    View on PubMed
  7. Ramos-Méndez J, Perl J, Faddegon B, Schümann J, Paganetti H. Geometrical splitting technique to improve the computational efficiency in Monte Carlo calculations for proton therapy. Med Phys. 2013 Apr; 40(4):041718.
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  8. Perl J, Shin J, Schumann J, Faddegon B, Paganetti H. TOPAS: an innovative proton Monte Carlo platform for research and clinical applications. Med Phys. 2012 Nov; 39(11):6818-37.
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  9. Choi G, Huang B, Pinarbasi E, Braunstein SE, Horvai AE, Kogan S, Bhatia S, Faddegon B, Nakamura JL. Genetically mediated Nf1 loss in mice promotes diverse radiation-induced tumors modeling second malignant neoplasms. Cancer Res. 2012 Dec 15; 72(24):6425-34.
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  10. Schümann J, Paganetti H, Shin J, Faddegon B, Perl J. Efficient voxel navigation for proton therapy dose calculation in TOPAS and Geant4. Phys Med Biol. 2012 Jun 7; 57(11):3281-93.
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  11. Shin J, Perl J, Schümann J, Paganetti H, Faddegon BA. A modular method to handle multiple time-dependent quantities in Monte Carlo simulations. Phys Med Biol. 2012 Jun 7; 57(11):3295-308.
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  12. Schreiber EC, Sawkey DL, Faddegon BA. Sensitivity analysis of an asymmetric Monte Carlo beam model of a Siemens Primus accelerator. J Appl Clin Med Phys. 2012; 13(2):3402.
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  13. O'Shea TP, Ge Y, Foley MJ, Faddegon BA. Characterization of an extendable multi-leaf collimator for clinical electron beams. Phys Med Biol. 2011 Dec 7; 56(23):7621-38.
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  14. Ge Y, Faddegon BA. Study of intensity-modulated photon-electron radiation therapy using digital phantoms. Phys Med Biol. 2011 Oct 21; 56(20):6693-708.
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  15. O'Shea TP, Foley MJ, Faddegon BA. Accounting for the fringe magnetic field from the bending magnet in a Monte Carlo accelerator treatment head simulation. Med Phys. 2011 Jun; 38(6):3260-9.
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  16. Nakamura JL, Phong C, Pinarbasi E, Kogan SC, Vandenberg S, Horvai AE, Faddegon BA, Fiedler D, Shokat K, Houseman BT, Chao R, Pieper RO, Shannon K. Dose-dependent effects of focal fractionated irradiation on secondary malignant neoplasms in Nf1 mutant mice. Cancer Res. 2011 Jan 1; 71(1):106-15.
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  17. Halabi T, Faddegon B. Practical quantitative measurement of graticule misalignment relative to collimator axis of rotation. J Appl Clin Med Phys. 2010; 11(4):3318.
    View on PubMed
  18. O'Shea TP, Sawkey DL, Foley MJ, Faddegon BA. Monte Carlo commissioning of clinical electron beams using large field measurements. Phys Med Biol. 2010 Jul 21; 55(14):4083-105.
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  19. Faddegon BA, Aubin M, Bani-Hashemi A, Gangadharan B, Gottschalk AR, Morin O, Sawkey D, Wu V, Yom SS. Comparison of patient megavoltage cone beam CT images acquired with an unflattened beam from a carbon target and a flattened treatment beam. Med Phys. 2010 Apr; 37(4):1737-41.
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  20. Sawkey D, Lu M, Morin O, Aubin M, Yom SS, Gottschalk AR, Bani-Hashemi A, Faddegon BA. A diamond target for megavoltage cone-beam CT. Med Phys. 2010 Mar; 37(3):1246-53.
    View on PubMed

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