Research Funding

  • July 15, 2009 - June 30, 2014 - The Response of Cancer and Stem/Progenitor Cells to Telomere Disruption , Principal Investigator . Sponsor: NIH, Sponsor Award ID: K08CA134552

Education

Swarthmore College, Swarthmore, PA, BA, 1995, Biology
Duke University, Durham, NC, PhD, 2002, Microbiology
Duke University, Durham, NC, MD, 2003, Medicine
University of California, San Francisco, CA, Resident/Fellow, 2003-2006, Anatomic Pathology
University of California, San Francisco, CA, Postdoctoral Fellow, 2005-2008, Biochemistry

Honors & Awards

  • 1995
    Phi Beta Kappa honor society
  • 1995
    Sigma Xi honor society
  • 1996-2003
    Medical Scientist Training Program Fellowship
  • 2005
    Ruth L. Kirschstein Postdoctoral Fellowship (declined)
  • 2005-2008
    American Cancer Society Postdoctoral Fellowship
  • 2010-present
    Mentored Clinical Scientist Development Award (K08)

Selected Publications

  1. Papanicolau-Sengos A, Singh O, Park K, Snuderl M, Tretiakova M, Merino M, Stohr B, Simko J, Deng FM, Chan E, Wu J, Barreto J, Gupta R, Park B, Turakulov R, Abdullaev Z, Solomon D, Aldape K DNA methylation-based classification of kidney neoplasms.  View on PubMed
  2. Sirohi D, Cornelia Ding CK, Stohr BA, Balassanian R, Vohra P, Aggarwal R, Chan E, Greenland NY The utility of next-generation sequencing in metastatic prostate cancer FNA biopsies.  View on PubMed
  3. Ding CC, Xiao H, Nguyen JK, Przybycin CG, Alaghehbandan R, Myles JL, Greenland NY, Simko JP, Sirohi D, Stohr BA, McKenney JK Classification of prostatic adenocarcinoma as favourable/unfavourable histology has high interobserver agreement in prostate needle core biopsies.  View on PubMed
  4. Chan E, Stohr BA, Sangoi AR, Sirohi D Invasive urothelial carcinoma with chordoid and myxoid features shows increased RAS/RAF pathway alterations.  View on PubMed
  5. Yang H, Song H, Yip E, Gilpatrick T, Chang K, Allegakoen P, Lu KL, Hui K, Pham JH, Kasap C, Kumar V, Gayle J, Stohr BA, Cornelia Ding CK, Wiita AP, Meng MV, Chou J, Porten SP, Huang FW. Bladder cancer variants share aggressive features including a CA125+ cell state and targetable TM4SF1 expression. Nat Commun. 2025 Jun 17; 16(1):5312.  View on PubMed
  6. Li H, Melnyk JE, Fu BXH, Shrestha R, Zhang M, Sjöström M, Feng S, Anderson JA, Han W, Chesner LN, Shin HJ, Farsh T, Suarez HJ, Nath S, Chou J, Das R, Egusa EA, Zhu J, Winters A, Maheshwari A, Hua JT, Alshalalfa M, Chen WS, Calvert M, Davicioni E, Kishishita A, Barpanda A, Liu T, Wiita AP, Stohr BA, Siddiqui J, Huang B, Small EJ, Shokat KM, Nelson P, Quigley DA, Wasmuth EV, Gilbert LA, Feng FY. Genome-wide CRISPR screens identify PTGES3 as a novel AR modulator. bioRxiv. 2025 May 31.  View on PubMed
  7. Moussavi-Baygi R, Ryan MJ, Sim W, Hoelscher SB, Luga V, Chandrakumar AA, Hoes L, Cha J, Lee YS, Herm K, Doron B, Ding CKC, Stohr BA, Jin P, Nadkarni T, Fang X, Haryono M, Nguyen A, Karthaus WR, Sawyers C, Feng FY, Goodarzi H, Bose R. Stochastically Emergent Tumors offer in vivo whole genome interrogation of cancer evolution from non-malignant precursors. bioRxiv. 2025 Mar 18.  View on PubMed
  8. Deepika Sirohi, Bradley Stohr, Ron Balassanian, Rahul Aggarwal, Chien-Kuang Cornelia Ding, Emily Chan, Nancy Greenland. 384 The Utility of Next-Generation Sequencing in Metastatic Prostate Cancer Fine-Needle Aspiration Biopsies. Laboratory Investigation. 2025 Mar 1; 105(3):102611.  View on PubMed
  9. Garrett Chan, Deepika Sirohi, Chien-Kuang Cornelia Ding, Janet Cowan, Peter Carroll, Bradley Stohr, Emily Chan, Nancy Greenland. 785 Evaluation of Atypical Intraductal Proliferation in Patients with Grade Group 1-2 or No Invasive Cancer on Prostate Biopsies including Decipher, PTEN and Subsequent Biopsy/Radical Prostatectomy Follow-up. Laboratory Investigation. 2025 Mar 1; 105(3):103018.  View on PubMed
  10. Garrett Chan, Xiaolin Zhu, Nancy Greenland, Bradley Stohr, Jeffry Simko, Chien-Kuang Cornelia Ding, Deepika Sirohi. 786 Clinical and Morphological Characterization of RAS/RAF/MAPK-Mutated Prostatic Adenocarcinoma. Laboratory Investigation. 2025 Mar 1; 105(3):103019.  View on PubMed
  11. Tim Gilpatrick, Chien-Kuang Cornelia Ding, Bradley Stohr, Kevin Lu, Franklin Huang, H. Yang, Sima Porten, Jonathan Chou. 806 Immunohistochemical Examination of CA-125 in Invasive Urothelial Carcinoma Histologic Variants. Laboratory Investigation. 2025 Mar 1; 105(3):103039.  View on PubMed
  12. Nancy Greenland, Janet Cowan, Chien-Kuang Cornelia Ding, Deepika Sirohi, Jeffry Simko, Peter Carroll, Bradley Stohr, Li Zhang, Emily Chan. 811 Correlation of Unfavorable, Borderline, and Favorable Histology at Radical Prostatectomy with Decipher Scores and Freedom from Biochemical Recurrence. Laboratory Investigation. 2025 Mar 1; 105(3):103044.  View on PubMed
  13. Neslihan Kayraklioglu, Li Zhang, Chien-Kuang Cornelia Ding, Nancy Greenland, Bradley Stohr, Vadim Koshkin, Jeffry Simko, Deepika Sirohi. 822 Correlation of the Degree of Pleomorphism and Lymphocytic Infiltration with Tumor Mutational Burden in High-Grade Urothelial Carcinoma. Laboratory Investigation. 2025 Mar 1; 105(3):103055.  View on PubMed
  14. Neslihan Kayraklioglu, Deepika Sirohi, Janet Cowan, Peter Carroll, Bradley Stohr, Chien-Kuang Cornelia Ding. 823 Molecular, Morphologic, and Immunohistochemical Characteristics of Tumors in Patients on Active Surveillance for Low Grade Prostatic Adenocarcinoma Who Developed Metastasis. Laboratory Investigation. 2025 Mar 1; 105(3):103056.  View on PubMed
  15. Natalia Sanchez, Bradley Stohr, Chien-Kuang Cornelia Ding, Nancy Greenland, Jeffry Simko, Deepika Sirohi. 891 DNA Damage Repair Mutations in Renal Cell Carcinomas. Laboratory Investigation. 2025 Mar 1; 105(3):103124.  View on PubMed
  16. Kara Tanaka, Chien-Kuang Cornelia Ding, Nancy Greenland, Bradley Stohr, Jeffry Simko, Deepika Sirohi. 901 Immunohistochemical Profile of Molecularly Verified Clear Cell Renal Cell Carcinomas. Laboratory Investigation. 2025 Mar 1; 105(3):103134.  View on PubMed
  17. Chien-Kuang Cornelia Ding, Janet E Cowan, Nancy Greenland, Bradley A. Stohr, Deepika Sirohi, Matthew R. Cooperberg, Jeff Simko, Peter Carroll. Application of canary histology classifier in prostate biopsies for risk stratification. Journal of Clinical Oncology. 2025 Feb 10; 43(5_suppl):412-412.  View on PubMed
  18. Kayraklioglu N, Stohr BA, Chan E. Clinicopathologic and Molecular Characterization of High-Risk Human Papillomavirus-Positive Carcinomas of the Urinary Tract. Arch Pathol Lab Med. 2025 Jan 01; 149(1):30-38.  View on PubMed
  19. Ivan de Kouchkovsky, Hao Nguyen, Hsin-Yu Chen, Xiaoxi Liu, Hecong Qin, Bradley A. Stohr, Romelyn Delos Santos, Michael A. Ohliger, Zhen Jane Wang, Robert A. Bok, Jeremy W. Gordon, Peder E.Z. Larson, Mary Frost, Kimberly Okamoto, Daniel Gebrezgiabhier, Matthew Cooperberg, Daniel B. Vigneron, John Kurhanewicz, Rahul Aggarwal. Dual hyperpolarized [1-13C]pyruvate and [13C]urea magnetic resonance imaging of prostate cancer. Journal of Magnetic Resonance Open. 2024 Dec 1; 21:100165.  View on PubMed
  20. Pinard A, Chen C, Van Ziffle J, Simko JP, Stohr BA, Chan E. Next-generation sequencing has diagnostic utility in challenging small/flat urothelial lesions. Ann Diagn Pathol. 2024 Dec; 73:152370.  View on PubMed

Go to UCSF Profiles, powered by CTSI