Selected Publications

  1. Cooperberg MR, Cowan JE, Lindquist KJ, Kobayashi Y, Simko JP, Bengtsson H, Singh K, Ngo V, Avila A, Newcomb LF, Tretriakova M, Lin DW, Stone S, Carroll PR, Paris PL. Multiple Tissue Biomarkers Independently and Additively Predict Prostate Cancer Pathology Outcomes. Eur Urol. 2021 01; 79(1):141-149.  View on PubMed
  2. Fitch B, Roy R, Geng H, Montecino-Rodriguez E, Bengtsson H, Gaillard C, Hiam K, Casero D, Olshen AB, Dorshkind K, Kogan SC. Human pediatric B-cell acute lymphoblastic leukemias can be classified as B-1 or B-2-like based on a minimal transcriptional signature. Exp Hematol. 2020 10; 90:65-71.e1.  View on PubMed
  3. Pamela Paris, Matthew R. Cooperberg, Janet Cowan, Karla Lindquist, Yasuko Kobayashi, Jeff Simko, Henrik Bengtsson, Khushboo L Singh, Lisa F. Newcomb, Daniel W. Lin, Peter Carroll. A multibiomarker approach to predict prostate cancer pathology outcomes. Journal of Clinical Oncology. 2019 Mar 1; 37(7_suppl):58-58.  View on PubMed
  4. Segal MR, Bengtsson HL. Improved accuracy assessment for 3D genome reconstructions. BMC Bioinformatics. 2018 05 30; 19(1):196.  View on PubMed
  5. Hayes J, Yu Y, Jalbert LE, Mazor T, Jones LE, Wood MD, Walsh KM, Bengtsson H, Hong C, Oberndorfer S, Roetzer T, Smirnov IV, Clarke JL, Aghi MK, Chang SM, Nelson SJ, Woehrer A, Phillips JJ, Solomon DA, Costello JF. Genomic analysis of the origins and evolution of multicentric diffuse lower-grade gliomas. Neuro Oncol. 2018 04 09; 20(5):632-641.  View on PubMed
  6. Puri S, Roy N, Russ HA, Leonhardt L, French EK, Roy R, Bengtsson H, Scott DK, Stewart AF, Hebrok M. Replication confers β cell immaturity. Nat Commun. 2018 02 02; 9(1):485.  View on PubMed
  7. Stephanie Hilz, Samuel J Shelton, Llewellyn Jalbert, Hang K Wong, Tali Mazor, Chibo Hong, Josie Hayes, Tracy Luks, Henrik Bengtsson, Annette Molinaro, Michael McDermott, Mitchel S Berger, Daniel Lim, Aaron Diaz, Joanna J Phillips, Susan Chang, Sarah Nelson, Michael C Oldham, Joseph Costello. GENE-33. THE 3D EVOLUTION AND IN VIVO GROWTH PATTERNS OF GLIOMA CELL POPULATIONS. Neuro-Oncology. 2017 Nov 6; 19(suppl_6):vi99-vi99.  View on PubMed
  8. Nguyen HG, Welty C, Lindquist K, Ngo V, Gilbert E, Bengtsson H, Magi-Galluzzi C, Jean-Gilles J, Yao J, Cooperberg M, Messing E, Klein EA, Carroll PR, Paris PL. Validation of GEMCaP as a DNA Based Biomarker to Predict Prostate Cancer Recurrence after Radical Prostatectomy. J Urol. 2018 03; 199(3):719-725.  View on PubMed
  9. Mazor T, Chesnelong C, Pankov A, Jalbert LE, Hong C, Hayes J, Smirnov IV, Marshall R, Souza CF, Shen Y, Viswanath P, Noushmehr H, Ronen SM, Jones SJM, Marra MA, Cairncross JG, Perry A, Nelson SJ, Chang SM, Bollen AW, Molinaro AM, Bengtsson H, Olshen AB, Weiss S, Phillips JJ, Luchman HA, Costello JF. Clonal expansion and epigenetic reprogramming following deletion or amplification of mutant IDH1. Proc Natl Acad Sci U S A. 2017 10 03; 114(40):10743-10748.  View on PubMed
  10. Hao Nguyen, Christopher Welty, Karla Lindquist, Vy Ngo, Elizabeth Gilbert, Henrik Bengtsson, Cristina Magi-Galluzzi, Jerome Jean Gilles, Jorge Yao, Matthew Cooperberg, Edward Messing, Eric Klein, Peter Carroll, Pamela Paris. PD71-05 VALIDATION OF GEMCAP AS A DNA BASED BIOMARKER TO PREDICT PROSTATE CANCER RECURRENCE AFTER RADICAL PROSTATECTOMY. The Journal of Urology. 2017 Apr 1; 197(4):e1357.  View on PubMed
  11. Hao Gia Nguyen, Christopher Welty, Karla Lindquist, Vy Ngo, Elizabeth Gilbert, Henrik Bengtsson, Cristina Magi-Galluzzi, Jerome Jean-Gilles, Jorge Yao, Matthew R. Cooperberg, Edward M. Messing, Eric A. Klein, Peter Carroll, Pamela Paris. Validation of GEMCaP as a DNA based biomarker to predict disease recurrence in patients undergoing prostatectomy for prostate cancer. Journal of Clinical Oncology. 2017 Feb 20; 35(6_suppl):58-58.  View on PubMed
  12. Scott C. Kogan, Huimin Geng, Ritu Roy, Encarnacion Montecino-Rodriguez, Coline M Gaillard, Kamir Hiam, Henrik Bengtsson, David Casero, Adam B Olshen, Kenneth Dorshkind. Genetic Subtypes of Human Pediatric ALLs Show Gene Expression Differences That Parallel Those Observed in Mouse B1 and B2 Progenitors, Suggesting Divergent Developmental Origins. Blood. 2016 Dec 2; 128(22):1741-1741.  View on PubMed
  13. Tali Mazor, Llewellyn Jalbert, Aleksandr Pankov, Chibo Hong, Josie Hayes, Ivan Smirnov, Roxanne Marshall, Arie Perry, Sarah Nelson, Susan Chang, Andrew Bollen, Annette Molinaro, Henrik Bengtsson, Adam Olshen, Joanna Phillips, Joseph Costello. GENT-05. DELETION OR AMPLIFICATION OF MUTANT IDH1 IS ASSOCIATED WITH EXTREME DNA HYPOMETHYLATION AND MALIGNANT PROGRESSION. Neuro-Oncology. 2016 Nov 1; 18(suppl_6):vi74-vi74.  View on PubMed
  14. Capurso D, Bengtsson H, Segal MR. Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions. Nucleic Acids Res. 2016 Mar 18; 44(5):2028-35.  View on PubMed
  15. Simon Pollett, Nicholas Wood, W. John Boscardin, Henrik Bengtsson, George Rutherford. Validating the Use of Google Enquiry Metadata to Enhance Pertussis Surveillance in Australia. Open Forum Infectious Diseases. 2015 Dec 9; 2(suppl_1):1818.  View on PubMed
  16. Segal MR, Bengtsson HL. Reconstruction of 3D genome architecture via a two-stage algorithm. BMC Bioinformatics. 2015 Nov 09; 16:373.  View on PubMed
  17. Tali Mazor, Brett E. Johnson, Matt Grimmer, Chibo Hong, Emily G. Hamilton, Lindsey E. Jones, Ana Xavier-Magalhães, Ivan V. Smirnov, Henrik Bengtsson, Adam B. Olshen, Kevin Petrecca, Andrew W. Bollen, Mitchel S. Berger, Barry S. Taylor, Sarah J. Nelson, Manish K. Aghi, Jennifer L. Clarke, Joanna J. Phillips, Susan M. Chang, Joseph F. Costello. GENO-25HYPERMUTATION AND MALIGNANT PROGRESSION IN AN EXPANDED COHORT OF TEMOZOLOMIDE-TREATED LOW-GRADE GLIOMA PATIENTS. Neuro-Oncology. 2015 Nov 1; 17(suppl_5):v97-v97.  View on PubMed
  18. Pollett S, Wood N, Boscardin WJ, Bengtsson H, Schwarcz S, Harriman K, Winter K, Rutherford G. Validating the Use of Google Trends to Enhance Pertussis Surveillance in California. PLoS Curr. 2015 Oct 19; 7.  View on PubMed
  19. Soroceanu L, Matlaf L, Khan S, Akhavan A, Singer E, Bezrookove V, Decker S, Ghanny S, Hadaczek P, Bengtsson H, Ohlfest J, Luciani-Torres MG, Harkins L, Perry A, Guo H, Soteropoulos P, Cobbs CS. Cytomegalovirus Immediate-Early Proteins Promote Stemness Properties in Glioblastoma. Cancer Res. 2015 Aug 01; 75(15):3065-76.  View on PubMed
  20. Scheinin I, Sie D, Bengtsson H, van de Wiel MA, Olshen AB, van Thuijl HF, van Essen HF, Eijk PP, Rustenburg F, Meijer GA, Reijneveld JC, Wesseling P, Pinkel D, Albertson DG, Ylstra B. DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly. Genome Res. 2014 Dec; 24(12):2022-32.  View on PubMed

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